STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09781Hypothetical protein. (155 aa)    
Predicted Functional Partners:
ISM_09786
Transcriptional regulatory protein; COG0640 Predicted transcriptional regulators.
  
 0.986
ISM_09811
Hypothetical protein; COG0625 Glutathione S-transferase.
 
  
 0.564
ISM_08895
Transcriptional regulator, ArsR family protein; COG0640 Predicted transcriptional regulators.
 
  
 0.523
ISM_09791
Metallo-beta-lactamase family protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
       0.509
ISM_09796
Hypothetical protein.
       0.509
ISM_12595
Probable methylamine; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
  
  0.404
ISM_13235
Hypothetical protein; COG2252 Permeases.
  
    0.402
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.