STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09791Metallo-beta-lactamase family protein; COG0491 Zn-dependent hydrolases, including glyoxylases. (354 aa)    
Predicted Functional Partners:
ISM_09796
Hypothetical protein.
       0.853
ISM_12435
Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase.
  
 0.738
ISM_16195
COG0236 Acyl carrier protein.
  
 
 
 0.670
ISM_08955
Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase.
  
 0.633
ISM_10720
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
 0.633
ISM_14440
Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase.
  
 0.633
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
 
 0.627
ISM_15790
Transcriptional regulator, LuxR family/hydrolase, alpha/beta fold family; COG2771 DNA-binding HTH domain-containing proteins.
    
 
 0.618
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.616
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
   
   0.613
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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