Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ISM_09901Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators. (214 aa)    
Predicted Functional Partners:
ISM_08000
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.771
ISM_07870
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.767
ISM_08245
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.750
ISM_06335
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.732
ISM_09896
Pyrimidine 5'-nucleotidase; COG1011 Predicted hydrolase (HAD superfamily).
       0.525
prmC
Modification methylase, HemK family protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
    
   0.489
ISM_15265
COG0440 Acetolactate synthase, small (regulatory) subunit.
  
    0.454
ISM_14445
COG1414 Transcriptional regulator.
  
    0.433
ISM_09891
COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
       0.416
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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