STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09926COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases. (428 aa)    
Predicted Functional Partners:
ISM_11805
MaoC domain protein; COG2030 Acyl dehydratase.
 
 0.945
ISM_11525
methylmalonyl-CoA epimerase; COG0346 Lactoylglutathione lyase and related lyases.
     
 0.944
ISM_16740
Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.
  
 0.943
ISM_09941
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
 
  
 0.933
ISM_05030
Hypothetical protein; COG2030 Acyl dehydratase.
 
 0.918
ISM_13860
COG1960 Acyl-CoA dehydrogenases.
  
  0.820
ISM_08435
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.679
ISM_09931
Acyltransferase family protein; COG2937 Glycerol-3-phosphate O-acyltransferase.
       0.659
ISM_01470
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 
 0.646
ISM_03940
Dihydrolipoamide acetyltransferase; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
   
 0.601
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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