Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_09941COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit. (658 aa)    
Predicted Functional Partners:
ISM_11675
Arginine/ornithine transport system ATPase; COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family.
 
 0.999
ISM_16800
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
 
0.996
ISM_11525
methylmalonyl-CoA epimerase; COG0346 Lactoylglutathione lyase and related lyases.
 
  
 0.981
ISM_13860
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.937
ISM_14700
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
    
 0.920
ISM_09926
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
  
 0.897
ISM_03940
Dihydrolipoamide acetyltransferase; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
  
 
 0.874
ISM_05030
Hypothetical protein; COG2030 Acyl dehydratase.
 
  
 0.832
ISM_14255
COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 
 0.825
ISM_16820
COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 
 0.825
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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