Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09986Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein. (464 aa)    
Predicted Functional Partners:
ISM_00145
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
   
 0.694
ISM_02765
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
   
 0.694
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
    
 0.688
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
    
 0.676
pgi
COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.653
ISM_08395
COG0837 Glucokinase; Belongs to the bacterial glucokinase family.
     
  0.633
ISM_15205
N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase.
    
 0.633
ISM_04665
COG3588 Fructose-1,6-bisphosphate aldolase.
     
  0.632
ISM_13350
COG0021 Transketolase; Belongs to the transketolase family.
     
  0.632
ISM_02820
Phosphomannomutase/phosphoglucomutase; COG1109 Phosphomannomutase.
     
  0.617
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: high (98%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.