STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10186Probable oxidoreductase; COG0277 FAD/FMN-containing dehydrogenases. (475 aa)    
Predicted Functional Partners:
ISM_01455
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 0.743
ISM_01450
COG2086 Electron transfer flavoprotein, beta subunit.
  
 0.737
ISM_06040
Formate dehydrogenase, beta subunit; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
   
 0.709
ISM_03915
2-oxoisovalerate dehydrogenase beta subunit; COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
  
 
 0.668
ISM_09931
Acyltransferase family protein; COG2937 Glycerol-3-phosphate O-acyltransferase.
    
 0.630
ISM_02565
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
    
  0.624
ISM_10456
COG2010 Cytochrome c, mono- and diheme variants.
    
  0.624
ISM_13230
COG2010 Cytochrome c, mono- and diheme variants.
    
  0.624
ISM_17500
Probable c-type cytochrome; COG2010 Cytochrome c, mono- and diheme variants.
    
  0.624
ISM_10196
Hypothetical protein; COG1733 Predicted transcriptional regulators.
 
     0.618
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.