STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10211Hypothetical protein. (265 aa)    
Predicted Functional Partners:
ISM_10206
epsK domain protein.
 
 
 0.949
ISM_07010
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
 
 0.837
ISM_07015
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
 
 0.837
ISM_07040
ABC transporter, permease protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.783
ISM_14410
Hypothetical protein.
  
     0.774
ISM_00765
Hypothetical protein.
  
     0.773
ISM_08935
Hypothetical protein.
  
     0.771
ISM_04520
Hypothetical protein.
  
     0.768
ISM_07005
core-2/I-branching enzyme family protein.
  
     0.767
ISM_13130
Hypothetical protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.766
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.