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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10296COG1802 Transcriptional regulators. (234 aa)    
Predicted Functional Partners:
ISM_03340
COG1802 Transcriptional regulators.
  
     0.760
ISM_08000
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.717
ISM_07870
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.653
ISM_10306
TRAP transporter, DctQ family protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.608
ISM_10311
TRAP transporter, DctP family protein, putative; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
     0.585
prmC
Modification methylase, HemK family protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
    
   0.551
ISM_10301
TRAP transporter, DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
       0.522
ISM_13645
Pyruvate dehydrogenase complex repressor; COG2186 Transcriptional regulators.
  
  
 0.470
ISM_08255
Dihydroxydipicolinate synthase family protein; COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
     0.443
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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