STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10306TRAP transporter, DctQ family protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (189 aa)    
Predicted Functional Partners:
ISM_10311
TRAP transporter, DctP family protein, putative; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.930
ISM_10301
TRAP transporter, DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.899
ISM_07250
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.694
ISM_04380
Hypothetical permease protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.657
ISM_04375
Hypothetical extracellular solute-binding protein, family 7 protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.631
ISM_07245
Extracellular solute-binding protein, family 7; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
    0.618
ISM_06655
Hypothetical extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.617
ISM_10296
COG1802 Transcriptional regulators.
 
     0.608
ISM_15290
Bacterial extracellular solute-binding protein, family 7 protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.516
ISM_04385
COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.498
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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