STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10321Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
ISM_10326
Hypothetical protein; COG4126 Hydantoin racemase.
 
     0.856
ISM_10341
N-carbamyl-D-amino acid amidohydrolase; COG0388 Predicted amidohydrolase.
 
    0.804
ISM_10331
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
     0.761
ISM_10336
COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
 
     0.731
ISM_10346
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 
     0.715
ISM_12250
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.711
ISM_10351
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 
     0.710
ISM_02715
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.705
ISM_07480
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.689
ISM_10251
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.681
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.