STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10341N-carbamyl-D-amino acid amidohydrolase; COG0388 Predicted amidohydrolase. (308 aa)    
Predicted Functional Partners:
ISM_10326
Hypothetical protein; COG4126 Hydantoin racemase.
 
     0.912
ISM_10331
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
     0.884
ISM_10336
COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
 
     0.810
ISM_10321
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
    0.804
ISM_10371
Dihydropyrimidinase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
 
 0.794
ISM_10346
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 
     0.766
ISM_10351
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 
     0.760
ISM_04830
Porphyromonas-type peptidyl-arginine deiminase family protein; COG2957 Peptidylarginine deiminase and related enzymes; Belongs to the agmatine deiminase family.
 
 0.748
ISM_10361
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
     0.739
ISM_10356
Putative ABC transporter ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.
       0.701
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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