STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10406Metallo-beta-lactamase family protein; COG0491 Zn-dependent hydrolases, including glyoxylases. (305 aa)    
Predicted Functional Partners:
ISM_10411
SoxH-like protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
 
  
 0.924
ISM_15650
Autoinducer-binding transcriptional regulator, LuxR family protein; COG2771 DNA-binding HTH domain-containing proteins.
    
 
 0.900
ISM_10720
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
 0.743
ISM_12435
Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase.
  
 0.738
ISM_08955
Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase.
  
 0.728
ISM_10456
COG2010 Cytochrome c, mono- and diheme variants.
  
     0.705
ISM_16210
Tat (twin-arginine translocation) pathway signal sequence domain protein; COG3108 Uncharacterized protein conserved in bacteria.
  
    0.691
ISM_10421
Hypothetical protein.
 
     0.689
ISM_10471
Regulatory protein SoxS; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.652
ISM_10426
COG3258 Cytochrome c.
 
   
 0.634
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.