Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_10411SoxH-like protein; COG0491 Zn-dependent hydrolases, including glyoxylases. (314 aa)    
Predicted Functional Partners:
ISM_10406
Metallo-beta-lactamase family protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
 
  
 0.927
ISM_10416
YeeE/YedE family protein; COG2391 Predicted transporter component.
 
     0.820
ISM_10481
YeeE/YedE family protein; COG2391 Predicted transporter component.
 
     0.735
ISM_10426
COG3258 Cytochrome c.
 
   
 0.730
ISM_10431
Sulfur oxidation molybdopterin C protein; COG2041 Sulfite oxidase and related enzymes.
 
  
  0.730
ISM_10436
Sulfur oxidation B protein; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
 
     0.713
ISM_10441
COG3258 Cytochrome c.
 
   
 0.707
ISM_10451
Sulfur oxidation protein SoxY; COG5501 Predicted secreted protein.
 
     0.691
ISM_10461
COG2143 Thioredoxin-related protein.
  
     0.679
ISM_10446
Sulfur oxidation Z protein.
 
     0.658
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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