STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10461COG2143 Thioredoxin-related protein. (200 aa)    
Predicted Functional Partners:
ISM_10456
COG2010 Cytochrome c, mono- and diheme variants.
 
     0.909
ISM_10471
Regulatory protein SoxS; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
     0.904
ISM_10451
Sulfur oxidation protein SoxY; COG5501 Predicted secreted protein.
 
   
 0.900
ISM_10446
Sulfur oxidation Z protein.
 
     0.884
ISM_10441
COG3258 Cytochrome c.
 
     0.871
ISM_10481
YeeE/YedE family protein; COG2391 Predicted transporter component.
 
     0.861
ISM_10436
Sulfur oxidation B protein; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
 
     0.828
ISM_10426
COG3258 Cytochrome c.
 
     0.822
ISM_10431
Sulfur oxidation molybdopterin C protein; COG2041 Sulfite oxidase and related enzymes.
 
     0.815
ISM_10421
Hypothetical protein.
 
     0.803
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.