STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10551N-methylproline demethylase, putative; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (681 aa)    
Predicted Functional Partners:
ISM_10546
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
 
    0.813
ISM_01450
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.696
ISM_06100
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
 0.652
ISM_01455
COG2025 Electron transfer flavoprotein, alpha subunit.
   
 
 0.623
ISM_13375
Hypothetical protein; COG1309 Transcriptional regulator.
  
    0.485
ISM_06305
Oxygen-insensitive NAD(P)H nitroreductase; COG0778 Nitroreductase.
    
 0.475
ISM_08730
Nitroreductase family protein; COG0778 Nitroreductase.
    
  0.460
ISM_04820
Probable methylamine; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
 
 
0.456
ISM_00300
COG0308 Aminopeptidase N.
    
 
 0.402
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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