Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ISM_10815COG1664 Integral membrane protein CcmA involved in cell shape determination. (176 aa)    
Predicted Functional Partners:
ISM_10820
Peptidase, M23/M37 family protein; COG0739 Membrane proteins related to metalloendopeptidases.
 
   
 0.878
ISM_10825
AhpC/TSA family protein; COG1225 Peroxiredoxin.
     
 0.635
ISM_01200
COG1868 Flagellar motor switch protein.
    
   0.600
ISM_05580
Hypothetical protein.
  
     0.528
ISM_11055
Hypothetical protein.
  
     0.513
ISM_10830
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
       0.481
ISM_03485
COG3159 Uncharacterized protein conserved in bacteria.
  
     0.471
ISM_02755
COG1792 Cell shape-determining protein.
 
     0.465
ISM_02750
Rod shape-determining protein MreB; COG1077 Actin-like ATPase involved in cell morphogenesis.
 
   
 0.451
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
   
    0.422
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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