Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ISM_10830Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. (1114 aa)    
Predicted Functional Partners:
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.742
ISM_09601
Hypothetical protein.
  
     0.696
ISM_10825
AhpC/TSA family protein; COG1225 Peroxiredoxin.
       0.693
ISM_09971
Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
 
     0.685
ISM_09436
Hypothetical protein.
  
     0.671
ISM_11990
Hypothetical protein.
  
     0.663
ISM_14590
Hypothetical protein.
  
     0.628
ISM_12180
Tellurite resistance protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.621
ISM_01390
Hypothetical protein.
  
     0.619
ISM_10840
Membrane protein, putative; COG0477 Permeases of the major facilitator superfamily.
       0.582
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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