STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10990Na/Pi-cotransporter family protein; COG1283 Na+/phosphate symporter. (559 aa)    
Predicted Functional Partners:
ISM_10995
Transcriptional regulator, DeoR family protein; COG1349 Transcriptional regulators of sugar metabolism.
       0.778
ISM_01600
Putative phosphonoacetate hydrolase protein; COG1524 Uncharacterized proteins of the AP superfamily.
 
     0.517
ISM_11000
Phosphonate monoester hydrolase, putative; COG3119 Arylsulfatase A and related enzymes.
 
     0.504
ISM_06485
OmpA domain protein; COG0226 ABC-type phosphate transport system, periplasmic component.
     
 0.472
ISM_01610
Putative transcriptional regulator, lysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.462
ISM_15835
CvpA family protein; COG1286 Uncharacterized membrane protein, required for colicin V production.
 
 
   0.433
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.