Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
ISM_10995Transcriptional regulator, DeoR family protein; COG1349 Transcriptional regulators of sugar metabolism. (265 aa)    
Predicted Functional Partners:
ISM_10990
Na/Pi-cotransporter family protein; COG1283 Na+/phosphate symporter.
       0.778
ISM_05615
COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.622
ISM_07755
COG1609 Transcriptional regulators.
  
   
 0.611
ISM_05005
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
   
 0.580
ISM_04305
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
   
 0.579
ISM_11170
acyl-CoA synthetase, putative; COG1042 Acyl-CoA synthetase (NDP forming).
    
   0.563
ISM_13845
COG0698 Ribose 5-phosphate isomerase RpiB.
 
  
 0.561
ISM_08290
Transcriptional regulatory protein; COG1609 Transcriptional regulators.
  
   
 0.560
ISM_08560
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
   
 0.553
ISM_13290
COG2188 Transcriptional regulators.
  
   
 0.531
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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