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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_10995Transcriptional regulator, DeoR family protein; COG1349 Transcriptional regulators of sugar metabolism. (265 aa)    
Predicted Functional Partners:
ISM_10990
Na/Pi-cotransporter family protein; COG1283 Na+/phosphate symporter.
       0.778
ISM_13845
COG0698 Ribose 5-phosphate isomerase RpiB.
 
 
 0.667
ISM_05615
COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.662
ISM_11170
acyl-CoA synthetase, putative; COG1042 Acyl-CoA synthetase (NDP forming).
    
   0.638
ISM_07755
COG1609 Transcriptional regulators.
  
   
 0.613
ISM_05005
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
   
 0.582
ISM_04305
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
   
 0.580
ISM_08290
Transcriptional regulatory protein; COG1609 Transcriptional regulators.
  
   
 0.562
ISM_08560
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
   
 0.555
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.550
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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