STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11030COG4529 Uncharacterized protein conserved in bacteria. (560 aa)    
Predicted Functional Partners:
ISM_11010
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
       0.599
ISM_11015
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
       0.598
ISM_11020
Oligopeptide ABC transporter, ATP-binding protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
       0.590
ISM_11025
Oligopeptide ABC transporter, ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
       0.590
ISM_05230
Hypothetical protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
 
     0.542
ISM_12075
Decarboxylase, pyridoxal-dependent; COG0019 Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
  0.501
ISM_09681
GDSL-like lipase/acylhydrolase, putative; COG2755 Lysophospholipase L1 and related esterases.
  
     0.475
ISM_00810
Possible endonuclease/exonuclease/phosphatase family protein.
  
    0.426
ISM_12740
COG0522 Ribosomal protein S4 and related proteins.
  
     0.422
ISM_11005
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
       0.409
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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