STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11060Hypothetical protein. (287 aa)    
Predicted Functional Partners:
ISM_09170
Alpha-1,2-fucosyltransferase, putative.
 
     0.796
ISM_14520
Methyltransferase, FkbM family protein; COG0500 SAM-dependent methyltransferases.
  
     0.731
ISM_13515
Lipopolysaccharide core biosynthesis mannosyltransferase; COG0438 Glycosyltransferase.
  
     0.653
ISM_09175
Glycosyl transferase, family 25; COG3306 Glycosyltransferase involved in LPS biosynthesis.
 
     0.610
ISM_11050
COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.
       0.553
ISM_11055
Hypothetical protein.
       0.553
ISM_15560
Hypothetical protein.
  
     0.504
ISM_12900
Hypothetical protein; COG0804 Urea amidohydrolase (urease) alpha subunit.
  
     0.492
ISM_02590
COG5430 Uncharacterized secreted protein.
  
     0.400
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.