STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11080Hypothetical protein. (251 aa)    
Predicted Functional Partners:
ISM_00480
Hypothetical protein; COG5434 Endopolygalacturonase.
 
 
   0.654
ISM_07005
core-2/I-branching enzyme family protein.
  
     0.636
ISM_06050
Hypothetical protein.
 
    0.632
ISM_12440
Lipoprotein, putative.
  
    0.610
ISM_11720
Hypothetical protein.
  
     0.598
ISM_15925
Hypothetical protein.
  
 
   0.595
ISM_02070
Hypothetical protein.
  
     0.573
ISM_05195
Hypothetical protein.
   
   0.558
ISM_05200
Hypothetical protein.
   
   0.558
ISM_11240
Hypothetical protein.
  
     0.553
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.