Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ISM_11140Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein. (152 aa)    
Predicted Functional Partners:
ISM_02285
Mechanosensitive ion channel family protein; COG3264 Small-conductance mechanosensitive channel.
  
     0.741
ISM_02175
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.668
ISM_16175
COG0776 Bacterial nucleoid DNA-binding protein.
  
     0.662
ISM_11135
COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III.
 
     0.534
ISM_02485
Hypothetical protein; COG1372 Intein/homing endonuclease.
  
     0.518
ISM_12440
Lipoprotein, putative.
  
     0.511
ISM_14670
Hypothetical protein; COG0059 Ketol-acid reductoisomerase.
  
     0.481
ISM_02185
Glutamine ABC transporter, periplasmic glutamine-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.473
ISM_02180
Hypothetical protein.
  
     0.450
ISM_03460
Hypothetical protein.
  
     0.449
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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