Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_11150Hypothetical protein. (303 aa)    
Predicted Functional Partners:
lcdH
3-hydroxybutyryl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.903
ISM_00330
Thioesterase superfamily protein; COG0824 Predicted thioesterase.
 
 
 0.763
ISM_03620
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
  
 0.708
ISM_04280
Putative hydroxlacyl-CoA dehydrogenase; COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
  
 0.670
ISM_11145
Transcriptional regulator, AraC family protein; COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
     0.634
ISM_14140
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
    0.545
ISM_03160
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
    
 0.505
ISM_03165
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
    
 0.495
ISM_11170
acyl-CoA synthetase, putative; COG1042 Acyl-CoA synthetase (NDP forming).
 
     0.490
ISM_11165
COG1960 Acyl-CoA dehydrogenases.
 
     0.470
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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