Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_11190TRAP dicarboxylate transporter, DctP subunit; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component. (339 aa)    
Predicted Functional Partners:
ISM_11195
TRAP dicarboxylate transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.892
ISM_11200
TRAP transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.883
ISM_11180
C4-dicarboxylate transport sensor protein dctB; COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
 
     0.641
ISM_11185
C4-dicarboxylate transport transcriptional regulatory protein DctD; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
 
     0.556
ISM_02975
COG4521 ABC-type taurine transport system, periplasmic component.
  
     0.400
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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