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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11235Hypothetical protein. (214 aa)    
Predicted Functional Partners:
ISM_11240
Hypothetical protein.
 
    0.935
ISM_11245
Hypothetical protein.
 
     0.849
ISM_11250
Hypothetical protein; COG0464 ATPases of the AAA+ class.
 
     0.714
ISM_11270
Hypothetical protein.
 
     0.588
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
   0.587
ISM_11275
Hypothetical protein; COG1196 Chromosome segregation ATPases.
 
     0.563
ISM_00540
Endonuclease/exonuclease/phosphatase family protein.
  
     0.561
ISM_09436
Hypothetical protein.
  
     0.553
ISM_04010
Putative glycolate oxidase; COG0277 FAD/FMN-containing dehydrogenases.
    
   0.530
ISM_11080
Hypothetical protein.
  
     0.522
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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