STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11250Hypothetical protein; COG0464 ATPases of the AAA+ class. (648 aa)    
Predicted Functional Partners:
ISM_11245
Hypothetical protein.
 
     0.922
ISM_11270
Hypothetical protein.
 
     0.895
ISM_11275
Hypothetical protein; COG1196 Chromosome segregation ATPases.
 
     0.889
ISM_11240
Hypothetical protein.
 
     0.878
ISM_04860
WD domain/cytochrome c family protein; COG2319 FOG: WD40 repeat.
  
 
 0.818
ISM_00035
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 0.813
ISM_10810
Molecular chaperone, DnaK; COG0443 Molecular chaperone.
 
 0.777
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
  0.769
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.748
ISM_09411
Hypothetical protein.
    
   0.748
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.