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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11250Hypothetical protein; COG0464 ATPases of the AAA+ class. (648 aa)    
Predicted Functional Partners:
ISM_11245
Hypothetical protein.
 
     0.926
ISM_11270
Hypothetical protein.
 
     0.900
ISM_11275
Hypothetical protein; COG1196 Chromosome segregation ATPases.
 
     0.894
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
  0.890
ISM_14275
NADH dehydrogenase alpha subunit.
   
 0.882
ISM_14280
Hypothetical protein.
   
 0.882
ISM_11240
Hypothetical protein.
 
     0.880
ISM_11260
Hypothetical protein; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair.
    
 0.825
ISM_01110
ABC transporter, ATP binding/permease protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
 0.797
ISM_01510
ABC transporter, transmembrane ATP-binding protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
 0.797
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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