STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11275Hypothetical protein; COG1196 Chromosome segregation ATPases. (358 aa)    
Predicted Functional Partners:
ISM_11270
Hypothetical protein.
 
     0.949
ISM_11250
Hypothetical protein; COG0464 ATPases of the AAA+ class.
 
     0.894
ISM_11245
Hypothetical protein.
 
     0.877
ISM_11240
Hypothetical protein.
 
     0.820
ISM_00810
Possible endonuclease/exonuclease/phosphatase family protein.
  
     0.637
ISM_11235
Hypothetical protein.
 
     0.563
dnaE2
DNA polymerase III, alpha subunit, putative; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
       0.519
ISM_11260
Hypothetical protein; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair.
       0.519
ISM_11265
Hypothetical protein; COG0468 RecA/RadA recombinase.
       0.519
ISM_11280
Beta-lactamase-like; COG0491 Zn-dependent hydrolases, including glyoxylases.
       0.449
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.