STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11365COG1414 Transcriptional regulator. (87 aa)    
Predicted Functional Partners:
ISM_11370
COG1414 Transcriptional regulator.
 
     0.929
ISM_11375
COG0747 ABC-type dipeptide transport system, periplasmic component.
 
     0.861
ISM_11410
Peptidase M20; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
  
     0.713
ISM_11405
Possible gamma-glutamyltranspeptidase precursor; COG0405 Gamma-glutamyltransferase.
  
    0.706
ISM_11380
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
     0.595
ISM_03330
Hypothetical protein; COG2049 Allophanate hydrolase subunit 1.
  
    0.570
ISM_03325
Urea amidolyase; COG1984 Allophanate hydrolase subunit 2.
  
    0.536
ISM_14700
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
    
  0.481
ISM_09175
Glycosyl transferase, family 25; COG3306 Glycosyltransferase involved in LPS biosynthesis.
  
     0.424
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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