Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
ISM_11375COG0747 ABC-type dipeptide transport system, periplasmic component. (486 aa)    
Predicted Functional Partners:
ISM_11380
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.965
ISM_11390
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.931
ISM_11400
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.883
ISM_11365
COG1414 Transcriptional regulator.
 
     0.861
ISM_01635
ABC peptide transporter, inner membrane subunit; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.826
ISM_11395
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.813
ISM_01640
Hypothetical protein; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.805
ISM_03355
ABC transporter permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.794
ISM_03360
ABC transporter permease protein; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.792
ISM_00240
Peptide/nickel/opine uptake family ABC transporter, permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.785
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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