Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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ISM_11435TRAP dicarboxylate transporter, DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component. (440 aa)    
Predicted Functional Partners:
ISM_11440
TRAP-T family transporter, DctQ (4TMs) subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.995
ISM_11430
Bacterial extracellular solute-binding protein, family 7 protein; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
 
  0.991
ISM_11420
Aldehyde dehydrogenase, putative; COG1012 NAD-dependent aldehyde dehydrogenases.
 
     0.846
ISM_11445
Hypothetical protein; COG3931 Predicted N-formylglutamate amidohydrolase.
 
     0.834
ISM_11450
Hypothetical protein; COG1737 Transcriptional regulators.
 
     0.829
ISM_11425
Gamma-glutamylisopropylamide synthetase, putative; COG0174 Glutamine synthetase.
 
     0.817
ISM_11415
Hypothetical protein; COG1454 Alcohol dehydrogenase, class IV.
 
     0.798
ISM_04380
Hypothetical permease protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.477
ISM_07250
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.432
ISM_06645
TRAP-T family transporter, small (4 TMs) inner membrane subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.418
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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