STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11445Hypothetical protein; COG3931 Predicted N-formylglutamate amidohydrolase. (260 aa)    
Predicted Functional Partners:
ISM_11450
Hypothetical protein; COG1737 Transcriptional regulators.
 
  
 0.909
ISM_11440
TRAP-T family transporter, DctQ (4TMs) subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.901
ISM_11420
Aldehyde dehydrogenase, putative; COG1012 NAD-dependent aldehyde dehydrogenases.
 
     0.836
ISM_11435
TRAP dicarboxylate transporter, DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
     0.836
ISM_11430
Bacterial extracellular solute-binding protein, family 7 protein; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
     0.818
ISM_11425
Gamma-glutamylisopropylamide synthetase, putative; COG0174 Glutamine synthetase.
 
    0.804
ISM_11415
Hypothetical protein; COG1454 Alcohol dehydrogenase, class IV.
 
   
 0.744
ISM_02740
Formiminoglutamate deiminase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
  
  
  0.564
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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