STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11535Membrane protein, putative. (236 aa)    
Predicted Functional Partners:
ISM_11540
Nitroreductase family protein; COG0778 Nitroreductase.
  
    0.870
ISM_11545
Hypothetical protein.
       0.638
ISM_08010
Hypothetical protein.
  
     0.633
ISM_10616
Hypothetical protein.
  
     0.577
ISM_03495
COG1183 Phosphatidylserine synthase.
  
     0.466
ISM_12410
COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis.
  
     0.455
ISM_02825
Hypothetical protein.
  
     0.451
ISM_00415
Hypothetical protein; COG0013 Alanyl-tRNA synthetase.
  
     0.434
ISM_06975
Hypothetical protein.
  
     0.418
ISM_11555
Hypothetical protein.
       0.417
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.