Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ISM_11565AsmA family protein; COG2982 Uncharacterized protein involved in outer membrane biogenesis. (652 aa)    
Predicted Functional Partners:
rimO
RNA modification enzyme, MiaB family protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.668
ISM_06580
Hypothetical protein.
  
   
 0.506
ISM_13415
Lipoprotein, putative.
  
     0.500
ISM_14675
Hypothetical protein.
  
     0.476
ISM_06630
COG2198 FOG: HPt domain.
 
     0.445
ISM_02820
Phosphomannomutase/phosphoglucomutase; COG1109 Phosphomannomutase.
 
   
 0.444
ISM_08355
Thioesterase family protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
  
     0.428
ISM_05595
Hypothetical protein.
  
     0.409
ISM_08360
Thioesterase family protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
  
     0.405
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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