STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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[Homology]
Score
ISM_11570Putative Membrane Fusion Protein Family member; COG1566 Multidrug resistance efflux pump. (397 aa)    
Predicted Functional Partners:
ISM_00695
Probable ATP-binding/permease fusion ABC transporter; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
 0.839
ISM_05600
Type I secretion outer membrane protein, TolC family protein; COG1538 Outer membrane protein.
  
 0.814
ISM_00700
COG1538 Outer membrane protein.
  
 0.796
ISM_17455
COG1538 Outer membrane protein.
  
 0.796
ISM_11575
Hypothetical protein.
       0.790
lolD
Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 
 0.598
ISM_03410
Cellulose synthase-like protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
 
 0.591
ISM_11580
Hypothetical protein.
       0.501
ISM_06300
Cation/multidrug efflux pump, membrane-fusion protein; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.486
ISM_06295
Cation/multidrug efflux pump, RND family protein; COG0841 Cation/multidrug efflux pump.
 
  
 0.482
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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