Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_11585COG0842 ABC-type multidrug transport system, permease component. (265 aa)    
Predicted Functional Partners:
ISM_09085
ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.933
ISM_02950
ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
 
 0.928
ISM_11580
Hypothetical protein.
       0.581
ISM_11540
Nitroreductase family protein; COG0778 Nitroreductase.
  
  
 0.562
ISM_07390
Putative cell surface polysaccharide export ABC-2 transporter permease protein; wzm1Y20833; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
    
  0.558
ISM_06305
Oxygen-insensitive NAD(P)H nitroreductase; COG0778 Nitroreductase.
  
  
 0.549
ISM_08730
Nitroreductase family protein; COG0778 Nitroreductase.
  
  
 0.549
ISM_08825
Cobalamin biosynthesis protein BluB; COG0778 Nitroreductase.
  
  
 0.549
ISM_08545
CAAX amino terminal protease family protein; COG1266 Predicted metal-dependent membrane protease.
   
  
 0.517
ISM_09376
CAAX amino terminal protease family protein; COG1266 Predicted metal-dependent membrane protease.
   
  
 0.517
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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