Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ISM_11650Hypothetical protein; COG3000 Sterol desaturase. (329 aa)    
Predicted Functional Partners:
ISM_04575
Hypothetical protein; COG1562 Phytoene/squalene synthetase.
  
 0.783
ISM_09050
Hypothetical protein.
   
 0.701
ISM_16970
COG2124 Cytochrome P450.
  
 0.675
ISM_01950
Hypothetical protein; COG2124 Cytochrome P450.
  
 0.674
ISM_05840
Hypothetical protein; COG0112 Glycine/serine hydroxymethyltransferase.
    
  0.664
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
   0.595
ISM_11645
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.593
ISM_00555
Hypothetical protein.
  
 0.573
purD
COG0151 Phosphoribosylamine-glycine ligase; Belongs to the GARS family.
    
   0.545
ISM_11670
ATP-dependent helicase HrpB; COG1643 HrpA-like helicases.
   
   0.532
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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