STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11695Peptidase, M23/M37 family protein; COG0739 Membrane proteins related to metalloendopeptidases. (330 aa)    
Predicted Functional Partners:
ISM_11700
ATP-dependent Clp protease, ATP-binding subunit ClpA; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.
  
  
 0.858
gloB
Putative hydroxyacylglutathione hydrolase (glyoxalase II) (GLX II)protein; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
       0.568
ISM_14555
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
     0.553
ISM_01200
COG1868 Flagellar motor switch protein.
   
   0.546
ISM_14560
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
  
  0.486
ISM_16175
COG0776 Bacterial nucleoid DNA-binding protein.
  
     0.480
ISM_12440
Lipoprotein, putative.
  
     0.477
ISM_02485
Hypothetical protein; COG1372 Intein/homing endonuclease.
  
  
  0.465
ISM_11710
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
       0.439
ISM_02175
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
  
  0.426
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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