STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11710Hypothetical protein; COG0500 SAM-dependent methyltransferases. (246 aa)    
Predicted Functional Partners:
ISM_16740
Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.
   
 0.811
gloB
Putative hydroxyacylglutathione hydrolase (glyoxalase II) (GLX II)protein; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
     
 0.731
ISM_01950
Hypothetical protein; COG2124 Cytochrome P450.
    
 0.730
ISM_16970
COG2124 Cytochrome P450.
    
 0.730
ISM_04765
HemY domain protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.700
ISM_04575
Hypothetical protein; COG1562 Phytoene/squalene synthetase.
 
  
 0.677
ISM_02105
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
     0.664
ISM_01290
COG4765 Uncharacterized protein conserved in bacteria.
  
     0.642
ISM_06870
HD domain protein; COG1896 Predicted hydrolases of HD superfamily.
  
     0.608
ftsQ
Cell division protein ftsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.602
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.