STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11830Hypothetical protein. (163 aa)    
Predicted Functional Partners:
ISM_11825
FAD dependent oxidoreductase; COG0277 FAD/FMN-containing dehydrogenases.
       0.762
lysS
COG1384 Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.713
ISM_10616
Hypothetical protein.
  
     0.614
ISM_03485
COG3159 Uncharacterized protein conserved in bacteria.
  
     0.603
ISM_13790
COG3216 Uncharacterized protein conserved in bacteria.
  
     0.535
ISM_04765
HemY domain protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.500
ISM_02855
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.494
ISM_00545
Putative heat shock protein DnaJ; COG1076 DnaJ-domain-containing proteins 1.
  
     0.480
ISM_04760
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
     0.477
ISM_06975
Hypothetical protein.
  
     0.477
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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