Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_11865Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (296 aa)    
Predicted Functional Partners:
ISM_11860
Acetyltransferase, GNAT family protein; COG3153 Predicted acetyltransferase.
       0.819
ISM_11875
Lipase, putative; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
      0.698
ISM_11870
Lipoprotein, putative.
       0.668
ISM_11855
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
    0.493
ISM_11880
Alkylphosphonate utilization protein PhnM, putative; COG3454 Metal-dependent hydrolase involved in phosphonate metabolism.
       0.448
secY
Preprotein translocase SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
   0.423
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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