Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_11885C4-dicarboxylate-binding periplasmic protein precursor; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component. (333 aa)    
Predicted Functional Partners:
ISM_11895
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
 
  0.989
ISM_11890
Putative small integral membrane tranport protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.881
ISM_12025
Probable DctM (C4-dicarboxylate permease, large subunit); COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.712
ISM_01050
Probable DctM (C4-dicarboxylate permease, large subunit); COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.707
ISM_05780
COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.689
ISM_11900
Carboxyvinyl-carboxyphosphonate phosphorylmutase; COG2513 PEP phosphonomutase and related enzymes.
 
     0.689
ISM_03875
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.688
ISM_13305
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.685
ISM_03725
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.661
ISM_02995
Putative integral membrane protein, possible transporter; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.651
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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