STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_11940DNA binding protein, putative; COG1396 Predicted transcriptional regulators. (284 aa)    
Predicted Functional Partners:
ISM_11945
COG3205 Predicted membrane protein.
 
     0.916
ISM_11950
COG3239 Fatty acid desaturase.
 
     0.908
ISM_00425
Hypothetical protein; COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
 
     0.775
ISM_07655
COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
  
 
 0.604
ISM_07665
HipA protein; COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
  
 
 0.604
ISM_11955
Membrane protein, putative; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
 
     0.574
ISM_12015
COG5598 Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family.
  
     0.524
ISM_12995
COG4583 Sarcosine oxidase gamma subunit.
  
     0.523
ISM_14570
Aminomethyl transferase family protein; COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
 
     0.469
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.459
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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