STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12040Membrane protein, putative. (574 aa)    
Predicted Functional Partners:
ISM_06060
COG1285 Uncharacterized membrane protein.
  
 
 0.816
atpE
FoF1 ATP synthase, subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
   
 0.760
ISM_12045
Hypothetical protein.
 
     0.726
ISM_13980
COG3220 Uncharacterized protein conserved in bacteria; Belongs to the UPF0276 family.
   
    0.698
ISM_12050
Diguanylate cyclase, putative; COG2199 FOG: GGDEF domain.
 
     0.675
ISM_17795
Y4BN.
  
 
 0.664
ISM_17380
COG3702 Type IV secretory pathway, VirB3 components.
   
    0.658
atpD
ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
 0.653
ISM_13985
Hypothetical protein; COG5572 Predicted integral membrane protein.
   
    0.630
ISM_12210
Putative Na+/H+ antiporter with cyclic nucleotide-binding domain; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters.
  
 
 0.619
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.