Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12070COG3820 Uncharacterized protein conserved in bacteria. (252 aa)    
Predicted Functional Partners:
ISM_12425
COG3814 Uncharacterized protein conserved in bacteria.
  
   
 0.789
lysS
COG1384 Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.777
ISM_06785
Transporter, Tim44 family protein; COG4395 Uncharacterized protein conserved in bacteria.
  
     0.771
ISM_01175
COG3750 Uncharacterized protein conserved in bacteria.
  
   
 0.747
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.719
ISM_12065
Ribonuclease T2 family protein; COG3719 Ribonuclease I; Belongs to the RNase T2 family.
       0.686
ISM_02105
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
     0.661
ISM_00380
Cobalt chelatase, pCobT subunit; COG0436 Aspartate/tyrosine/aromatic aminotransferase.
  
     0.647
atpF
ATP synthase F0, B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.646
ISM_06970
Exonuclease, putative; COG0349 Ribonuclease D.
  
     0.644
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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