Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12300Hypothetical protein. (167 aa)    
Predicted Functional Partners:
ISM_12305
TRAP-T family transporter, large (12 TMs) inner membrane subunit; COG3333 Uncharacterized protein conserved in bacteria.
  
 
 0.862
ISM_12295
COG3181 Uncharacterized protein conserved in bacteria.
  
  
 0.757
ISM_12335
L-carnitine dehydratase/bile acid-inducible protein F; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
  
    0.611
ISM_12315
Putative succinate dehydrogenase membrane anchor; COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
       0.569
ISM_12320
COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
       0.569
ISM_12330
COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain.
       0.569
ISM_12340
COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
       0.569
ISM_12310
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
       0.566
ISM_12325
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
       0.566
ISM_03995
COG3181 Uncharacterized protein conserved in bacteria.
  
  
 0.526
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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