STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12425COG3814 Uncharacterized protein conserved in bacteria. (170 aa)    
Predicted Functional Partners:
ISM_12070
COG3820 Uncharacterized protein conserved in bacteria.
  
   
 0.784
ISM_01175
COG3750 Uncharacterized protein conserved in bacteria.
  
   
 0.781
ISM_12410
COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis.
 
    0.759
ISM_06785
Transporter, Tim44 family protein; COG4395 Uncharacterized protein conserved in bacteria.
  
     0.743
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.711
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.703
lysS
COG1384 Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.697
ISM_14450
COG3807 Uncharacterized protein conserved in bacteria.
  
     0.694
ISM_12430
COG2059 Chromate transport protein ChrA.
       0.690
ISM_07725
COG0625 Glutathione S-transferase.
  
     0.670
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.