STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12440Lipoprotein, putative. (671 aa)    
Predicted Functional Partners:
ISM_15780
Hypothetical protein.
  
     0.759
ISM_00860
Lipoprotein, putative; COG3087 Cell division protein.
 
     0.731
ISM_12960
COG4961 Flp pilus assembly protein TadG.
  
    0.731
ISM_14795
Hypothetical protein.
  
     0.711
rne
Ribonuclease, Rne/Rng family protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
     
  0.708
ISM_05110
isoleucyl-tRNA synthetase.
  
     0.683
ISM_05595
Hypothetical protein.
  
     0.678
ISM_12950
Hypothetical protein.
  
    0.677
ISM_02485
Hypothetical protein; COG1372 Intein/homing endonuclease.
  
     0.671
ISM_12955
Hypothetical protein.
  
    0.670
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.