STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12440Lipoprotein, putative. (671 aa)    
Predicted Functional Partners:
ISM_15780
Hypothetical protein.
  
     0.759
ISM_02485
Hypothetical protein; COG1372 Intein/homing endonuclease.
  
  
  0.743
ISM_00860
Lipoprotein, putative; COG3087 Cell division protein.
 
     0.740
ISM_17350
Conjugal transfer protein, trbG; COG3504 Type IV secretory pathway, VirB9 components.
    
 
 0.734
ISM_12960
COG4961 Flp pilus assembly protein TadG.
  
    0.730
ISM_14795
Hypothetical protein.
  
     0.711
ISM_05110
isoleucyl-tRNA synthetase.
  
     0.683
ISM_12950
Hypothetical protein.
  
    0.682
ISM_05595
Hypothetical protein.
  
     0.678
ISM_12955
Hypothetical protein.
  
    0.676
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.