Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ISM_12515TRAP transporter, 4TM/12TM fusion protein; COG4666 TRAP-type uncharacterized transport system, fused permease components. (738 aa)    
Predicted Functional Partners:
ISM_12510
TRAP transporter solute receptor, TAXI family protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component.
 
 
  0.989
ISM_12550
TRAP dicarboxylate transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
     
  0.900
ISM_08195
Outer membrane protein, hypothetical; COG2358 TRAP-type uncharacterized transport system, periplasmic component.
 
    0.804
ISM_10281
TRAP-T family transporter, periplasmic substrate binding subunit; COG2358 TRAP-type uncharacterized transport system, periplasmic component.
 
    0.802
ISM_12520
Oxidoreductase, FAD-binding protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.802
ISM_02930
TRAP transporter solute receptor, TAXI family protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component.
 
    0.788
ISM_00905
Immunogenic protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component.
 
    0.764
ISM_14920
Hypothetical protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component.
 
    0.617
ISM_12525
Hypothetical protein; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.535
ISM_12530
Acetylpolyamine aminohydrolase; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
       0.492
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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